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IEEE/ACM Transactions on Computational Biology and Bioinformatics—Apr-June (Vol. 5, No. 2)


Table of Contents

Front Covers


Consensus Genetic Maps as Median Orders from Inconsistent Sources
Benjamin N. Jackson, Patrick S. Schnable, Srinivas Aluru

Extracting Dynamics from Static Cancer Expression Data
Anupam Gupta, Ziv Bar-Joseph

Graphical Models of Residue Coupling in Protein Families
John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg

Identification of Protein Coding Regions Using the Modified Gabor-Wavelet Transform
Jesús P. Mena-Chalco, Helaine Carrer, Yossi Zana, Roberto M. Cesar

Search for Steady States of Piecewise-Linear Differential Equation Models of Genetic Regulatory Networks
Hidde de Jong, Michel Page

Toward Verified Biological Models
Avital Sadot, Jasmin Fisher, Dan Barak, Yishai Admanit, Michael J. Stern, E. Jane Albert Hubbard, David Harel

Computing Phylogenetic Diversity for Split Systems
Andreas Spillner, Binh T. Nguyen, Vincent Moulton

Haplotyping for Disease Association: A Combinatorial Approach
Giuseppe Lancia, R. Ravi, Romeo Rizzi

Highly Scalable Genotype Phasing by Entropy Minimization
Alexander Gusev, Ion I. Măndoiu, Bogdan Paşaniuc

Inferring Connectivity of Genetic Regulatory Networks Using Information-Theoretic Criteria
Wentao Zhao, Erchin Serpedin, Edward R. Dougherty

Nature Reserve Selection Problem: A Tight Approximation Algorithm
Magnus Bordewich, Charles Semple

Optimal Algorithms for the Interval Location Problem with Range Constraints on Length and Average
Yong-Hsiang Hsieh, Chih-Chiang Yu, Biing-Feng Wang

Prediction of R5, X4, and R5X4 HIV-1 Coreceptor Usage with Evolved Neural Networks
Susanna L. Lamers, Marco Salemi, Michael S. McGrath, Gary B. Fogel

Shorelines of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping Problems
Leo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie

2SNP: Scalable Phasing Method for Trios and Unrelated Individuals
Dumitru Brinza, Alexander Zelikovsky